al., [39]. A close examination of the gene encoding Rv3623 revealed that it is 207 bp shorter with a deletion in the N-terminal region that includes the signal peptide and the predicted lipo-box in the genomic sequences of M. bovis AF2122/97 and M. bovis BCG Pasteur 1173P2. The gene is annotated to encode a lipoprotein in the M. bovis strains even though the lipo-box is missing and it is therefore questionable whether

it should be considered as a lipoprotein in M. bovis. The identification of this protein with 7 peptides covering 34% of its sequence in M. tuberculosis H37Rv suggests that it is a major lipoprotein. The two lipoproteins listed in Table 3, annotated as “”periplasmic phosphate-binding lipoprotein”" (Rv0932c) is a known antigen [44] that also induces antibody responses in tuberculosis patients [45]. The 19 kDa lipoprotein antigen precursor (Rv3763) BYL719 mouse have been extensively studied due to its immunogenic properties [46–49]. Enrichment and analysis AZD5153 in vivo of lipoproteins with respect to humoral and cell-mediated immunity in infected individuals might ultimately lead to the identification of additional antigens that can serve as

biomarkers for M. tuberculosis infection. Conclusion In summary, we have enriched and extracted membrane- and membrane-associated proteins from M. tuberculosis H37Rv using Triton X-114, and identified the largest number of this subset of proteins reported so far. Further analysis of the data obtained in this study with bioinformatic tools suggests that several of these proteins are major membrane

proteins. We have described one major lipoprotein of M. tuberculosis which has become a pseudogene by the RD9 deletion in M. bovis. Methods Preparation Janus kinase (JAK) of crude bacterial extracts The mycobacterial reference strain M. tuberculosis H37Rv (ATCC 27294), used in this study was kindly provided by Dr Harleen Grewal, The Gade Institute, University of Bergen, Bergen, Norway. The bacilli were cultured on Middelbrook 7H10 agar plates with OADC enrichment (BD Difco) at 37°C and 5% CO2 for 3-4 weeks. Bacterial colonies were harvested by using an extraction buffer consisting of phosphate-buffered saline (PBS), pH 7.4 with freshly added Roche Protease Inhibitor Cocktail (Complete, EDTA-free, Roche Gmbh, Germany). Six hundred μl of this extraction buffer was added to each agar plate and the mycobacterial colonies were gently scraped off the agar surface using a cell scraper. Aliquots of the resulting pasty bacterial mass was transferred into 2 ml cryo-tubes with O-rings (Sarstedt, Norway) Bucladesine solubility dmso containing 250 μl of acid washed glass beads (≤ 106 μm; Sigma-Aldrich, Norway) and an additional 600 μl of extraction buffer, and stored at -80°C until protein extraction was performed. For protein extraction, the mycobacteria were disrupted mechanically by bead-beating in a Ribolyser (Hybaid, UK) at max speed (6.5) for 45 seconds.